- Foundational Model of Anatomy
- Gene Ontology
- HUGO Gene Nomenclature Committee
- Human Phenotype Ontology
- ICD-10 Procedure Coding System
- ICD-10-CM (available for US users only)
- ICD-9-CM
- LOINC
- MeSH
- MedlinePlus Health Topics
- Metathesaurus Names
- NCBI Taxonomy
- NCI Thesaurus
- National Drug File
- Online Mendelian Inheritance in Man
- RXNORM
- SNOMED CT (available for US users only)
Extracting entities, relations, and contextual attributes
Palmyra-Med uses context-aware models to extract medical entities, relations, and contextual attributes. Each text entity is extracted into a medical dictionary entry.The maximum size of the medical text is 10,000 Unicode characters.
| BM_UNIT | Body measurement unit |
| BM_VALUE | Value of a body measurement |
| BODY_FUNCTION | Function carried out by the human body |
| BODY_MEASUREMENT | A normal measurement of the human body, such as a vital sign |
| LABORATORY_DATA | Results of testing a bodily sample |
| LAB_RESULT | Qualitative description of laboratory data, such as increased, decreased, positive, or negative |
| LAB_UNIT | Unit of measurement for a laboratory value |
| LAB_VALUE | Value of an instance of laboratory data |
| MEDICAL_DEVICE | Physical or virtual instrument |
| MEDICINE | Drug or other preparation for treatment or prevention of disease |
| MED_DOSE | Medication dose |
| MED_DURATION | Medication duration |
| MED_FORM | Physical characteristics of the specific medication |
| MED_FREQUENCY | How often the medication is taken |
| MED_ROUTE | Body location at which the medication is administered |
| MED_STATUS | For an existing medication, status can be a modifier such as “continue”, “start”, “restart”, “stop”, “switch”, “increase”, “decrease”. |
| MED_STRENGTH | Amount of active ingredient in a dose of medication |
| MED_TOTALDOSE | Quantity of medication to take at one time |
| MED_UNIT | Unit of measurement for the active ingredient in a medication |
| PROBLEM | Medical condition, including findings and diseases |
| PROCEDURE_RESULT | Results of a procedure |
| PROCEDURE | Diagnostic or treatment procedure |
| PROC_METHOD | Method in which a procedure is conducted |
| SEVERITY | Severity of the medical condition |
| SUBSTANCE_ABUSE | Abuse of a psychoactive substance |